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Basic procedures for bacteria culture(3)

1. Prepare an agarose gel, according to recipes listed below, by combining the agarose (low gel temperature agarose may also be used) and water in a 500 ml Ehrlenmeyer flask, and heating in a microwave for 2-4 minutes until the agarose is dissolved.

                            0.7%               1.0%             2.0%           agarose           1.05 g              1.5 g           3.0 g           20X TAE           7.5 ml              7.5 ml          7.5 ml           ddH2O            142.5 ml           142.5 ml        142.5 ml           EtBr (5 mg/ml)    25 ul              25 ul           25 ul           total vol        150 ml              150 ml          150 ml

Genetic technology grade (800669) or low gel temperature (800259) agarose from Schwarz/Mann Biotech.

2. Add 20X TAE and ethidium bromide (EtBr), swirl to mix, and pour the gel onto a taped plate with casting combs in place. Allow 20-30 minutes for solidification.

3. Carefully remove the tape and the gel casting combs and place the gel in a horizontal electrophoresis apparatus. Add 1X TAE electrophoresis buffer to the reservoirs until the buffer just covers the agarose gel.

4. Add at least one-tenth volume of 10X agarose gel loading dye to each DNA sample, mix, and load into the wells. Electrophorese the gel at 150-200 mA until the required separation has been achieved, usually 0.5-1 hour (100-120 mA for low gel temperature agarose), and cool the gel during electrophoresis with a fan. Visualize the DNA fragments on a long wave UV light box and photograph with a Polaroid camera.

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